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The miaViz package implements functions to visualize TreeSummarizedExperiment objects especially in the context of microbiome analysis. Part of the mia family of R/Bioconductor packages.
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Microbiome Analysis Plotting and Visualization
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Loading the full README.
Read the full README ↗The scope of this package is the plotting and visualization of microbiome data.
The main classes for interfacing is the TreeSummarizedExperiment class.
Online tutorials and examples are available at:
Feel free to contribute by forking and opening a pull request. Please make sure
that required data wrangling should be designed as reusable as possible and
potentially find a better home in the mia
package.
Additionally, please make sure that working examples are included and that
vignetted make use of added functions in either miaViz or the
TreeSummarizedExperiment
package.
Let's use a git flow kind of approach. Development version should be done
against the master branch and then merged to release for release.
(https://guides.github.com/introduction/flow/)
if (!requireNamespace("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("miaViz")
if (!requireNamespace("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("miaViz")
Please note that the miaViz project is released with a Contributor Code of Conduct. By contributing to this project, you agree to abide by its terms.