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티켓·문서·근무시간·고객대화를 한 곳에 모아 KI로 검색, 소프트웨어 기업 고객 프로젝트용, 오픈소스로 자체 서버·독일 클라우드에 배포
ecoPrimals를 위한 생태계 문서·조정, 원시 레지스트리·아키텍처 표준·팀 인계·사후 검토
Ecosystem documentation and coordination — primal registry, architecture standards, team handoffs, and after-action reviews for ecoPrimals
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The Watering Hole - ecoPrimals Ecosystem Guidance
Purpose: Authoritative project guidance for every primal in the ecoPrimals ecosystem
Audience: Any primal, at any point in its evolution — and four external audiences (PIs, students, builders, compliance)
Last Updated: Aug 1, 2026 (Wave 155n post-threshold: gen5 THESIS PROVEN ON LIVE DATA. 5 NUCLEUS gates. 7 glacial goals COMPLETE. 31 tracked. biomeOS v4.56 G22 COMPLETE. 46 depot bins. 35 docs fossilized.)README 전문 보기 ↗Purpose: Authoritative project guidance for every primal in the ecoPrimals ecosystem
Audience: Any primal, at any point in its evolution — and four external audiences (PIs, students, builders, compliance)
Last Updated: Aug 1, 2026 (Wave 155n post-threshold: gen5 THESIS PROVEN ON LIVE DATA. 5 NUCLEUS gates. 7 glacial goals COMPLETE. 31 tracked. biomeOS v4.56 G22 COMPLETE. 46 depot bins. 35 docs fossilized.)
The Watering Hole is the shared knowledge layer of the ecoPrimals project. Every primal - whether newly conceived or production-hardened - comes here to understand the ecosystem it belongs to: what other primals exist, what standards govern interoperability, how coordination works, and what principles guide evolution.
This is not documentation about a subdirectory. This is the living reference for the entire project.
A primal is a collection of primitives - small, focused capabilities that solve one domain well. Primals are autonomous: each is a self-contained Rust binary that knows only itself. Complexity is never solved by making a primal larger. It is solved through coordination - primals composing their primitives together at runtime, orchestrated by biomeOS.
Key properties of every primal:
Primitives are the atomic operations a primal provides. BearDog's primitives include Ed25519 signing, BLAKE3 hashing, and X25519 key exchange. Songbird's primitives include TLS 1.3 handshakes, mDNS discovery, and UDP multicast. A primitive is the smallest unit of capability in the ecosystem.
Primals communicate via JSON-RPC 2.0 over platform-agnostic transports (Unix sockets, abstract sockets, TCP, named pipes). They never share memory or embed each other's code. biomeOS discovers primals by their capabilities at runtime and coordinates them into higher-order behaviors.
The result: complex systems emerge from simple composition, rather than being engineered monolithically.
These primals form the NUCLEUS deployment architecture. They are the bedrock of the ecosystem - production-ready, extensively tested, and required for core ecosystem function.
| Primal | Domain | Role | Status |
|---|---|---|---|
| BearDog | Cryptography | All cryptographic operations: signing, encryption, key exchange, hashing, certificates, genetic lineage | Production (A+ LEGENDARY) |
| Songbird | Networking | Network orchestration: TLS 1.3, service discovery, NAT traversal, federation, BirdSong protocol, Pure Rust Tor | Production (S+) |
| NestGate | Data Storage | Content-addressed storage, dataset management, capability-based service discovery | Production (A++ TOP 1%) |
| ToadStool | Hardware Infrastructure | Hardware discovery, capability probing, compute orchestration: CPU, GPU, NPU, WASM, containers, edge. 23,000+ tests (9,232+ lib), 112 JSON-RPC methods (17 groups). Node Atomic for sovereign compute. ecoBin v3.0 certified. riboCipher CLEAR + MitoBeacon. Zero-copy dispatch. Cross-architecture (cargo check --target x86_64-pc-windows-gnu passes, S329). Phase 2 Silicon Atheism: cross-platform GPU backends — WgpuGpuDiscovery, PortableSwapExecutor, PortableResourceHandle (S332). S333 structural debt — 7 large files refactored, hardcoded primal names → capability terms. Zero clippy warnings. Zero /tmp hardcoding. 100% env centralized. VFIO sovereign dispatch validated. | Production (A++ GOLD, S333+) |
| BarraCuda | Pure Math | 806 WGSL f64 shaders (the mathematics), naga-IR optimisation (FMA fusion, DCE), precision strategy (f64/DF64/f32). Writes the math; coralReef compiles it; toadStool runs it. Budded from ToadStool (S93). v0.3.5, 3,400+ tests | Production (A+) |
| coralReef | Shader Compilation | Sovereign WGSL→native shader compiler. naga parser + lowering passes (f64, FMA fusion, dead expression elimination). JSON-RPC IPC via XDG discovery. AMD E2E proven, NVIDIA SM70-SM89. coral-gpu unified compute abstraction. VFIO dispatch with PFIFO channel + V2 MMU + USERD_TARGET fix. coral-glowplug production-grade boot-persistent PCIe device lifecycle broker (systemd daemon, personality hot-swap, health monitor, auto-D0 recovery, VFIO-first boot, graceful shutdown, DRM render node fencing, IOMMU group handling). FECS firmware direct execution proven (LS bypass on clean falcon). SEC2 EMEM breakthrough (Exp 066-069). D3hot→D0 sovereign VRAM recovery. Sovereign power management designed (5-state model). Reproducibility checklist for adding new GPUs |
These primals build emergent behaviors on the NUCLEUS foundation. They compose into higher-order patterns (RootPulse, Memory & Attribution Stack) coordinated by biomeOS via the Neural API. Each is functional and tested, representing the next evolutionary phase.
| Primal | Domain | Role | Status |
|---|---|---|---|
| petalTongue | Representation | Universal UI: visual, audio, terminal, web, headless. Accessibility-first multi-modal rendering | Production (A++) |
| rhizoCrypt | Ephemeral Memory | Content-addressed DAG engine for working memory. Sessions, Merkle trees, real-time streaming | Production (A+) |
| sweetGrass | Attribution | Semantic provenance (v0.7.38). W3C PROV-O braids, fair attribution, 37 canonical methods + 10 wire-name aliases, tarpc 0.37 + REST + UDS, UniBin, ecoBin, Edition 2024, GAP-36 wire reconciliation, Provenance Trio coordination, Tower Atomic enforced | Production |
| LoamSpine | Permanence | Immutable linear ledger for selective permanence. Loam Certificates for ownership and transfer | Production (A+) |
| skunkBat | Defense | Defensive network security: threat detection, graduated response, baseline profiling | Production |
| Tool | Purpose |
|---|---|
| sourDough | Starter culture - scaffolding, genomeBin tooling, ecosystem bootstrapping |
Primals achieve their greatest power through composition. These are not separate projects - they are coordination patterns that emerge when primals work together.
What: BearDog (crypto) + Songbird (TLS/HTTP) = Pure Rust HTTPS
How: Songbird implements TLS 1.3 protocol logic. BearDog provides all cryptographic operations via JSON-RPC. Neither embeds the other. The result is a fully Pure Rust HTTPS stack with zero C dependencies.
Used by: Any primal that needs external network access routes through Tower Atomic.
What: The full primal composition orchestrated by biomeOS.
Layers:
Note: BarraCuda budded from ToadStool into a standalone primal (S93). BarraCuda is pure math — WGSL shaders and precision strategy. coralReef compiles the math to native GPU binaries. ToadStool discovers and dispatches hardware. Springs depend on BarraCuda directly for math without pulling ToadStool's runtime or coralReef's compiler.
biomeOS composes these atomics based on what capabilities are available at runtime.
Three coordination domains form the ecosystem's nervous system. Each uses the
5 CoordinationPattern execution strategies (Sequential, Parallel, ConditionalDag,
Pipeline, Continuous) but serves a distinct biological purpose:
| Domain | Role | Analogy | Status |
|---|---|---|---|
| quorumSignal | SENSE — observe, discover, react | Afferent nervous system | First-class: 15 atomic graphs, signal.dispatch |
| rootPulse | ACTION — create, mutate, prove | Efferent nervous system | Partial: nest.commit signal + pattern wired |
| waterFall | SYNC — ecosystem coherence across gates | Autonomic nervous system | Fully Rust (membrane temporal.cascade), manifest-driven |
Named after bacterial quorum sensing: collective behavior emerges when enough gate NUCLEUS instances participate. The quorum is the minimum primal set for an atomic operation — Tower quorum is 3, Nest quorum is 4, Full NUCLEUS is 13.
Short triad: quorum, pulse, fall.
Specification: primalSpring/specs/NEURAL_API_EVOLUTION.md (Coordination Domains section)
What: Distributed version control that emerges from primal coordination - not a monolithic VCS. The "pulse" coordination domain of the triad.
Composition:
Coordinator: biomeOS orchestrates these primals via the Neural API. No primal knows about "version control" - biomeOS composes their primitives into temporal coordination patterns, and version control emerges.
Core insight: "rootPulse is what primals DO together, not what they ARE."
Five operations: commit, branch, merge, diff, federate — all composed from atomic primal capabilities via signal.dispatch and graph.execute.
What: The emergent coordination layer formed when 2+ NUCLEUS instances bond covalently.
Analogy: Named after the slime mold Physarum polycephalum -- no central brain, collective intelligence, pulsing coordination, graceful degradation.
How: biomeOS on any gate queries the local Songbird mesh for bonded peers, connects to their NUCLEUS instances, and aggregates capabilities, models, and load into a unified collective view. Workloads route to the best gate based on capability match, resource availability, and model affinity.
Key properties:
Specification: phase2/biomeOS/specs/PLASMODIUM_OVER_NUCLEUS_SPEC.md
CLI: biomeos plasmodium status|gates|models
What: biomeOS's adaptive orchestration layer that routes semantic requests to capable primals.
How: A caller requests capability.call("crypto", "sha256") and the Neural API discovers which primal provides that capability, routes the request, and returns the result. The caller never needs to know about BearDog specifically.
Architecture:
Five Coordination Patterns (all driven by TOML graphs):
| Pattern | Method | Description |
|---|---|---|
| Sequential | graph.execute | Nodes in dependency order |
| Parallel | graph.execute | Independent nodes concurrently |
| ConditionalDag | graph.execute | DAG with condition/skip_if branching |
| Pipeline | graph.execute_pipeline | Streaming via bounded mpsc channels — items flow through nodes immediately |
| Continuous | graph.start_continuous | Fixed-timestep tick loop (e.g., 60Hz for game engines) |
biomeOS as Composition Primal: biomeOS is functionally the super-service — the primal that composes all other primals into systems. While it sits at the same level as other primals (sovereign, self-contained, JSON-RPC first), its unique role is orchestrating emergent systems: RootPulse (version control), RPGPT (game engines), AlphaFold-class (protein folding), and any other system that emerges as a function of primal coordination.
Streaming (v2.43): Pipeline graphs use NDJSON streaming — primals write multiple
response lines per request. The AtomicClient::call_stream() reads them as they
arrive. No new protocol needed. All primals already have streaming transport.
The PathwayLearner analyzes execution metrics and suggests optimizations (parallelization, prewarming, batching, caching) that improve over time.
These standards define how every primal is built, packaged, and deployed.
One binary per primal, multiple operational modes via subcommands. Professional CLI with --help, --version, and structured error messages. Every primal is a single executable named after itself.
Specification: fossilRecord/wave150s_standards/ECOBIN_ARCHITECTURE_STANDARD.md (consolidated — UniBin is a subset of ecoBin)
ecoBin = UniBin + Pure Rust + Cross-Platform. Zero C dependencies in application code, cross-compiles to any Rust target with a single cargo build command, platform-agnostic IPC with runtime transport discovery.
Specification: fossilRecord/wave150s_standards/ECOBIN_ARCHITECTURE_STANDARD.md
genomeBin = ecoBin + deployment wrapper. Self-extracting archive that auto-detects the system, installs the correct binary, configures services, and validates health. One command installs on any system with zero manual configuration.
Specification: See fossilRecord/wave150s_standards/ECOBIN_ARCHITECTURE_STANDARD.md (genomeBin section)
UniBin (structure) → One binary, multiple modes
↓
ecoBin (portability) → + Pure Rust, cross-compilation, platform-agnostic IPC
↓
genomeBin (deployment) → + Auto-detection, service integration, health monitoring
All ecoBins are UniBins. All genomeBins are ecoBins. Each stage adds capability without replacing the previous.
JSON-RPC 2.0 over platform-agnostic transports. Capability-based discovery with zero cross-embedding. Every primal implements its own IPC independently - standards define WHAT, primals implement HOW.
Specification: protocols/CAPABILITY_WIRE_STANDARD.md (IPC protocol consolidated here)
Behavioral specification for multi-transport IPC. Each primal discovers the best transport at runtime: Unix sockets on Linux/macOS, abstract sockets on Android, named pipes on Windows, TCP as universal fallback. No shared IPC crate - each primal owns its communication code.
Specification: protocols/CAPABILITY_BASED_DISCOVERY_STANDARD.md
Encrypted UDP discovery protocol for auto-trust within genetic lineages. Songbird broadcasts encrypted beacons; only primals sharing the same family seed can decrypt them. Zero metadata leakage.
Specification: birdsong/BIRDSONG_PROTOCOL.md
Method names describe intent, not implementation: crypto.sign, tls.handshake, storage.put. Domain namespaces enable Neural API translation and isomorphic evolution across primals.
Specification: protocols/SEMANTIC_METHOD_NAMING_STANDARD.md
A group of primals sharing a common family_seed - enabling cryptographic auto-trust. BearDog manages lineage seeds (nuclear DNA, for identity/permissions) and beacon seeds (mitochondrial DNA, for Dark Forest discovery).
Primals of the same genetic lineage trust each other automatically. Decryption of a BirdSong beacon proves family membership. No manual configuration, no certificate authorities.
No trust without family membership. Encrypted payloads are unreadable to outsiders. Continuous validation. Dark Forest protocol ensures zero metadata leakage - observers cannot even tell that communication is occurring.
Zero C dependencies eliminates entire classes of memory safety vulnerabilities. RustCrypto suite for all cryptographic operations. No openssl, no ring, no C assembly.
rootpulse_commit graph orchestrates dehydration → sign → store → commit → attributeprovenance_pipeline graph — universal experiment provenanceDetail: See primal composition maps in compositions/PRIMAL_REGISTRY.md
Single Responsibility: Each primal does one thing. BearDog only does cryptography. Songbird only does networking. Complexity emerges from coordination, not from expanding scope.
Interface Segregation: Primals expose narrow, focused interfaces. LoamSpine doesn't know about "commits" - it provides append-only storage. biomeOS composes that into version control.
Dependency Inversion: Primals depend on abstract capabilities, not concrete implementations. Any storage provider works, not just NestGate.
Message Passing: Communication via messages over IPC, never shared state. No locks, no race conditions, inherently concurrent.
Emergence Over Engineering: Don't build a monolithic VCS - coordinate existing primals and let version control emerge. Don't build a monolithic security stack - let BearDog and Songbird compose into Tower Atomic.
STANDARDS_AND_EXPECTATIONS.md — Single-document reference for all standards, expectations, and conventionsGLOSSARY.md — Definitive ecosystem terminologyORTHOGONAL_DIMENSIONS_REVIEW.md — Active dimensional review toolfoundations/ — Architectural Invariants (9 standards)Long-term architectural standards — rarely change.
| Standard | Summary |
|---|---|
DIDERM_DOMAIN_ARCHITECTURE.md | Domain trust barriers (primals.eco / primal.eco / nestgate.io) + sovereignty evolution roadmap |
DARK_FOREST_GLACIAL_GATE_STANDARD.md | 5 security invariants |
K_DERM_TOPOLOGY_STANDARD.md | Cell envelope model (layers, bonding, channels) |
BONDING_MODEL_STANDARD.md | Organo-metallo-salt bonding model |
SOVEREIGNTY_STANDARDS.md | Calibrate → shadow → cutover protocol |
OVERWATCH_POSITION_STANDARD.md | Floating coordination position |
LICENSING_AND_COPYLEFT.md | scyBorg copyleft framework |
PRIMAL_SPRING_GARDEN_TAXONOMY.md | Primal / spring / garden / tool taxonomy |
SECRETS_AND_SEEDS_STANDARD.md | Seed and credential management |
protocols/ — Wire Protocols & IPC (10 standards)Stable once shipped — wire formats, capability system, coordination patterns.
| Standard | Summary |
|---|---|
BTSP_PROTOCOL_STANDARD.md | BearDog Trust Security Protocol |
RIBOCIPHER_TRANSPORT_SIGNAL_STANDARD.md | Transport signal routing (3 tiers) |
CAPABILITY_WIRE_STANDARD.md | Capability-based wire format |
CAPABILITY_BASED_DISCOVERY_STANDARD.md | Runtime capability discovery |
CAPABILITY_DOMAIN_REGISTRY.md | Canonical domain namespace registry |
SEMANTIC_METHOD_NAMING_STANDARD.md | domain.verb API naming |
IMPULSE_POTENTIAL_STANDARD.md | Inter-gate impulse/potential coordination |
CONTEXT_BRAID_STANDARD.md | Ephemeral developer-state weaving |
ECOSYSTEM_COMMUNICATION_STANDARD.md | Three-layer coordination (git + impulses + braids) |
PROVENANCE_TRIO_INTEGRATION_GUIDE.md | rhizoCrypt + loamSpine + sweetGrass wiring |
operations/ — Gate Deployment & Mesh Ops (12 standards)Evolve with infrastructure — deployment, ownership, gate operations.
| Standard | Summary |
|---|---|
GATE_SETUP_STANDARD.md | Gate setup, sync, resync protocol |
GATE_NUCLEUS_SYSTEMD_STANDARD.md | systemd deployment standard |
GATEHOUSE_DARKFOREST_STANDARD.md | Drawbridge + Dark Forest demarcation |
GRAPHENEGATE_BOOTSTRAP_STANDARD.md | Android Dark Forest bootstrap |
MESH_DEPLOYMENT_STANDARD.md | Multi-gate mesh handoff |
DEPLOYMENT_VALIDATION_STANDARD.md | Deployment validation protocol |
DISTRIBUTED_COVALENT_DEPLOYMENT.md | Multi-gate compute architecture |
GATE_SPRING_OWNERSHIP.md | Canonical gate-spring routing |
GATE_TEAM_COORDINATION_MATRIX.md | Team-gate-hardware assignment |
REPO_MEMBRANE_BOUNDARY.md | Inner/outer membrane repo classification |
DISCOVERED_BY_STANDARD.md | Discovery narrative standard |
SPORE_OWNERSHIP_MATRIX.md | Spore/gate ownership assignments |
compositions/ — Composition Patterns (6 standards)Evolve with products — routing, health, tick models.
| Standard | Summary |
|---|---|
COMPOSITION_ROUTING_STANDARD.md | Live composition deployment (wildcard DNS, drawbridge, CAS) |
COMPOSITION_HEALTH_STANDARD.md | Composition health JSON-RPC |
COMPOSITION_TICK_MODEL_STANDARD.md | Temporal tick model for compositions |
CROSS_SPRING_COORDINATION_STANDARD.md | Cross-spring data flow |
MEMBRANE_CHANNEL_ARCHITECTURE.md | 3 channels + RustDesk |
PRIMAL_REGISTRY.md | Authoritative primal/spring catalog |
birdsong/ — BirdSong protocol, Dark Forest beacon genetics, Tower Atomic TLSbtsp/ — BearDog technical stacksporePrint/ — Content guide + spring evolution targetspetaltongue/ — Integration docs (7 files)airspring/ — Composition guidancehealthspring/ — Composition guidancecompute-sharing/ — Sovereign compute sharing + workload definitionsprovision/ — golgi provisioning scripts + Caddyfilessystemd/ — Service templates + cascade timersgraphs/ — Declarative deploy graph TOMLsheads/ — Auto-published gate status filespublications/ — Auditable data transfers for papers and pseudoSporepublications/LATTICE_QCD_CONSUMER_GPU_DATA.md — SU(2) HMC results (arXiv hep-lat)handoffs/ECOSYSTEM_BLURB.md — Current wave blurb (dissemination artifact)handoffs/SPOREPRINT_BLURB.md — sporePrint demonstration era blurbhandoffs/TEAM_STARTUP_BLURB_TEMPLATE.md — Gate/code team bootstrappingfossilRecord/ — All archived content across Waves 34–155nIf you are a new primal entering the ecosystem:
compositions/PRIMAL_REGISTRY.md to see what capabilities already existprotocols/CAPABILITY_WIRE_STANDARD.md (JSON-RPC 2.0)compositions/PRIMAL_REGISTRY.md with your primitivesSTANDARDS_AND_EXPECTATIONS.md)You do not need to know about other primals. You need to know what you can do, and how to tell the ecosystem about it.
Every spring and primal should be independently reviewable by outsiders.
See STANDARDS_AND_EXPECTATIONS.md for the full checklist,
but the short version is: a reviewer should be able to do this in 5 minutes:
README.md → understand what this does and what it replacescargo test --workspace → see all tests passcargo run --release --bin validate_<something> → see explicit PASS/FAILCHANGELOG.md → understand recent evolutionwhitePaper/baseCamp/README.md → see the faculty and science contextFour external audiences will read your repo without context:
| Audience | What They Look For |
|---|---|
| Faculty / PIs | What does this replace? How does it compare to commercial tools? Can I verify claims? |
| Students / Core Facilities | How do I build it? How do I run it? Where do I start? |
| Hardware Builders / Hobbyists | What hardware does it need? What can my GPU do? How do I contribute compute? |
| Compliance / Institutional Review | What standards does it meet? What are the dependencies? Is it safe? What's the license? |
The publicRelease/ documents in whitePaper/attsi/non-anon/contact/publicRelease/
make ecosystem-wide claims. Each spring and primal must ensure its own presentation
supports those claims.
The Watering Hole is maintained by all primals. Every primal's evolution strengthens the whole ecosystem.
| Site | Purpose |
|---|---|
| sporeprint.primals.eco | ecoPrimals ecosystem documentation (400+ pages) |
| detroit.primals.eco | Public evidence library — Detroit charter school racketeering investigation (181 pages) |
| gorilla.primals.eco | guerillaGorilla accountability infrastructure methodology |
| footprint.primals.eco | Sovereign GIS platform |
| webb.primals.eco | esotericWebb cross-evolution CRPG |
| Production (Phase 10, Iter 52) |
| Squirrel | AI Coordination | Sovereign AI model context protocol, multi-MCP coordination, vendor-agnostic inference | Production (A++) |
| biomeOS | Orchestration | Composition primal: v4.56 G22 COMPLETE — single-process dual-protocol (riboCipher + JSON-RPC), 244 capabilities, 27 signal graphs, 5 coordination patterns, capability routing, NUCLEUS composition, PathwayLearner, bonding model, Dark Forest, provenance trio wiring, signal.dispatch, primal.announce, composition.test_swap, stability tiers, adaptive routing weights, composition intelligence, guideStone contract | Production (v4.56, Security A++ LEGENDARY) |