ChlamAtlas

A model organism database for Chlamydia research

chlamatlas.org · Hybiske Lab · University of Washington

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ChlamAtlas is a community-facing scientific resource that consolidates genomic, proteomic, structural, and mutant data for Chlamydia species — data that is otherwise scattered across spreadsheets, supplemental files, and lab notebooks.

What's Inside

• Genomes — Browse annotated genes across C. trachomatis D/UW-3, C. trachomatis L2/434, and C. muridarum Nigg; view protein properties, expression data, and cross-strain orthologs
• AlphaFold Structures — Interactive 3D structure viewer (Mol*) with homology-inferred function annotations for every protein
• Mutant Library — Curated collection of characterized and in-progress mutants with phenotype data and pipeline tracking
• Pipeline — Multi-lab workflow tracking across the Hybiske, Rockey, and Hefty labs
• Tools — Sequence alignment and structure alignment utilities

Access Tiers

Tier	Access
Public	All genomic/proteomic data, published mutants, AlphaFold structures
Lab member	Everything above + unpublished mutants, pipeline records, internal notes
Admin	Full read/write access, user management

Access is enforced at the database level via Supabase Row-Level Security.

Tech Stack

Vanilla JS · Tailwind CSS · Supabase (Postgres + Auth + RLS) · Mol* · Vercel

Repository Layout

web/          Main application (HTML/CSS/JS)
structures/   AlphaFold mmCIF files
images/       Protein structure thumbnails and microscopy images
schema/       Database schema and migration files
scripts/      Data import and utility scripts

Contact

Kevin Hybiske · [email protected] · Hybiske Lab