zuxlsx

Read .xlsx workbooks from R, password-protected ones included, with no system XML, ZIP or cryptography library required.

zuxlsx bundles the xlsxio reader and links the Expat parser, the miniz ZIP reader and TF-PSA-Crypto statically at install time, out of the sibling packages zuxml, zukomp and zucrypt. Those are LinkingTo dependencies only: the archives end up inside zuxlsx.so, so none of the three has to be installed or loadable once zuxlsx is built.

Writing workbooks is out of scope.

Usage

library(zuxlsx)

path <- system.file("extdata", "two-sheets.xlsx", package = "zuxlsx")

xlsx_sheets(path)                      # "readings" "notes"
xlsx_read(path)                        # first worksheet as a data frame
xlsx_read(path, sheet = "readings", range = "A1:B3")

xlsx_read() gives each column the type its cells support: logical, double, character, Date or POSIXct. A column that cannot hold its cells becomes character rather than failing. range takes A1 notation, and either corner may name a cell, a column or a row, so "B2:D10", "A:C" and "2:10" are all accepted.

Both Excel date systems are handled. The workbook's own date1904 setting decides which is used, and the 1900 system's phantom 29 February 1900 is accounted for, so dates before March 1900 are not a day early.

A password-protected workbook is read by passing its password, to any of the readers:

xlsx_read("protected.xlsx", password = "s3cret")

It is decrypted in memory and never written to disk. zuxlsx decrypts agile encryption, which Excel has written since 2013, and checks the integrity code stored with the file before decrypting anything. Office 2007's older standard encryption is recognised and refused by name.

Underneath, for worksheets that are not rectangular enough for a data frame:

xlsx_cells(path)     # one row per cell: position, type, text, numeric value
xlsx_rows(path)      # a worksheet row by row as text, padded to a rectangle

# A chunk at a time; returning FALSE stops the read, so finding something
# near the top of a large worksheet does not pay for the rest.
xlsx_stream_cells(path, callback = function(cells) { str(cells); FALSE })

Installation

zuxlsx needs zuxml, zukomp and zucrypt at build time, and its configure script will stop with an explanatory message if their static archives are missing. All three are on CRAN, so installing zuxlsx installs them first:

install.packages("zuxlsx")

The development version is on GitHub:

# install.packages("pak")
pak::pak("pedrobtz/zuxlsx")

Errors

Every error carries a condition class, so calling code can tell a corrupt archive from a missing file without matching on message text:

tryCatch(
  xlsx_sheets("broken.xlsx"),
  zuxlsx_zip_error   = function(e) "not a readable ZIP archive",
  zuxlsx_ooxml_error = function(e) "a ZIP, but not a workbook",
  zuxlsx_error       = function(e) "something else went wrong"
)

See ?"zuxlsx-conditions" for the full list.

Third-party code

The bundled xlsxio reader is MIT licensed and is never edited in place. It is re-derived from the pristine 0.2.36 release archive plus the patches in tools/patches/xlsxio/, and tools/vendor/verify checks offline that the committed tree, the manifests and the attribution all still agree.